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Day 6 R packages , Bioconductor Packages, Loading Packages, Rtools , Most Active Github

Took one day off, feel slightly guilty about it.
Continuing on Coursera , checking R packages , there are 10326 R packages, wow astonishing.

Issue 1:

Unable to update R packages in default library on Windows 7

http://stackoverflow.com/questions/5059692/unable-to-update-r-packages-in-default-library-on-windows-7

Issue 2:
slidify is not available for r version 3.3.3

http://stackoverflow.com/questions/27445536/slidify-package-not-available-in-r-3-1-2

https://github.com/ramnathv/slidify/issues/405

Issue 3
Username parameter is deprecated. Please use ramnathv/slidify

Issue 4
 there is no package called 'magrittr'
ERROR: lazy loading failed for package 'slidify'
Similar for stringi package

Finally
* installing *source* package 'slidify' ...
** R
** inst
** tests
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* DONE (slidify)

Get the list of installed packages by user in R

installed.packages()

BioConductor Packages
> source("http://bioconductor.org/biocLite.R")
Installing package into ‘C:/Users/Maqta/Documents/R/win-library/3.3’
(as ‘lib’ is unspecified)
trying URL 'https://bioconductor.org/packages/3.4/bioc/bin/windows/contrib/3.3/BiocInstaller_1.24.0.zip'
Content type 'application/zip' length 126079 bytes (123 KB)
downloaded 123 KB

package ‘BiocInstaller’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\Maqta\AppData\Local\Temp\Rtmp0cT69N\downloaded_packages
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
> biocLite()
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.3 (2017-03-06).
Installing package(s) ‘Biobase’, ‘IRanges’, ‘AnnotationDbi’
also installing the dependencies ‘Rcpp’, ‘BH’, ‘plogr’, ‘BiocGenerics’, ‘S4Vectors’, ‘DBI’, ‘RSQLite’

Most Active Data Scientists, Free Books, Notebooks & Tutorials on Github


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